Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GFDPE-KAQCCLVENGQILTHGSGGKGYGLASTGVTSGCYQWKFYIVKENRGNEGTCVGVSRWPVHDFN-HRTTSDMWLYRAYSGNLYHNGEQTLTLSSFTQGDFITCVLDMEAR---TISFGKNGEEPKLAFEDVDAAELYPCVMFYSSNPGEKVKICDMQMR
3TOJ Chain:A ((289-477))
-LALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAA-RLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDGSSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKS--------------
General information:
TITO was launched using:
RESULT:
Template:
3TOJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75863 for 1065 contacts (-71.2/contact) +
2D Compatibility (PS) -15438 + (NN) -9649 + (LL) 732
1D Compatibility (HY) -5200 + (ID) 1350
Total energy: -106768.0 ( -100.25 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_3TOJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TOJ-query.scw
PDB file :
Tito_Scwrl_3TOJ.pdb
: