Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MQEPLLGAEGPDYDTFPEKPPPSPGDRARVGTLQNKRVF--LATFAAVLGNFSFGYALVYTSPV-----IPALERSLDPDLHLTKSQ---------------ASWFGSVFTLGAAAGGLSAMILN--------DLLGRKLSIMFSAVPSAAGY------ALMAGAHGLWMLLLG-------RTLTGFAGGLTAACIPVYVS---------EIAPPGVRGALGATPQLMAVFGSLSLY----ALGLLLPWRWLAVAG--EAPVLIMIL---------LLSFMPNSPRFLLSRGRDEEALRALAWLR----GTDVDVHWEFEQIQDNVRRQSSRVSWAEARAPHVCRPITVALLMR--------LLQQLTGITPILVYLQSIFDSTAVLLPPKDDAAIVGAVRLLSVLIAALTMDLAGRKVLLFVSAAIMFAANLTLGLYIHFGPRP------------LSPNSTAGLESESWGDLAQPLAAPAGYLTLVPLLATMLFIMGYAVGWGPI-----TWLLMSEVLPLRAR--GVASGLCVLA-----SWLTAF-VLTKSFLPVVSTFGLQVPFFFFAAICLVSLVFTGCCVPETKGRSLEQIESFFRTGRRSFLR----------------------------- |
| 3VSM Chain:A ((27-659)) | NIQELQNFERWFKNNLSYSFSQKAEKVVNPNRNWNDNTVFDNLSPWTSVPDFGTVCHTL-IGYCVRYNNTSDTLYQNPELAYNLINGLRIICSKLPDPPPHQQAPWGPVADWYHFTITMPEVFMNITIVLNETQHYDEAASLTRYWLGLYLPTAVNSMGWHRTAGNSMRMGVPYTYSQMLRGYSLAQIRQEQGIQEILNTIAFPYVTQGNGLHVDSIYIDHIDVR-AYGYLINSYFTFAYYTYYFGDEVINTVGLTRAIENVGSPEGVVVPGVMSRNGTLYSNVIGNFITYPLAVHSADYS----KVLTKLSKTYYGSVVGVTNRLAYYESDPTNNIQAPLWTMARRIWNRRGRIINYNANTVSFESGIILQSLNGIMRI----PSGTTSTQSFRPTIGQTAIAKTDTAGAILVYAKFAEMNN----LQFKSCTLFYDHGMFQLYYNIGVEPNSLNNTNGRVIVLSRDTSVNTNDLSFEAQRINNNNSSEGTTFNGVVCHRVPITNINVPSLTVRSPNSSVELVEQIISFQTMYTATASACYKLNVEGHSDSLRAFRVNSDENIYVNVGNGVKALFNYPWVMVKENNKVSFMSANEDTTIPFSVIMNSFTSIGEPALQYSPSNCFVYGNGFKLNNSTFDLQFIFEIV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -401402 for 3937 contacts (-102.0/contact) +
2D Compatibility (PS) -51497 + (NN) -4302 + (LL) 1496
1D Compatibility (HY) -16800 + (ID) 4400
Total energy: -476905.0 ( -121.13 by residue)
QMean score : 0.196
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