Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MGEQNHSPGKELQHRTRAEAPGKKSWHSQAYALGAVSNFMSTFLTF-----PIYKVVFRQQIHAMAV--SEAVRQLWHEGPQYFY----------RGIYPPLLSKTLQGTLLFGTY--DSLLCF------LSPVG--PHTLGHRWAAGLMSGVVEAVALSPFERVQNVLQDGRKQARFPST------------------FSILKEFNSYGLWGRLSLGYYRGFWPVLARNSLGSALYFSFKDPIQDGLAEQGLPHWVPALVSGSVNGTITCLVLYPLIVLVANMQSHIG-----WQNMPSLWASAQDV----------WNTRGRKLLLIYRGGSLVILRSSVTWGLTTAIHDFLQRKSHSRKELKTD- |
| 3ODN Chain:A ((117-614)) | TCCTYNMETRMAMQSRQQLEGHTKDQISRMSGILGSKATKFKDIFTALLKESRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRVDLLEVMDKFFNTLYQKMFTVLNTQYTFDENYMRCVSEHMKELKPFGDVPDKLSVQIKRSFVATRTYGQALTTASEVAKKVLNADCTGALTKMQHCGACKGYTEKPCTNYCVNVIKGCLHYQHEFDSEWENFAMAMDKVAERLLGSFNIVMVVEPLNIKISE-AIMNFQDSGQDITNRVFQGCGREPILDRIVRDIRQRVKDYKKFWSNLPHSVCSNEDIASSSDVDGMCWNGHTIDR---YMHSITTESNPEFMASQLSHLKNAIVHLRNAYNGQDVEW |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -101181 for 2088 contacts (-48.5/contact) +
2D Compatibility (PS) -30468 + (NN) 5771 + (LL) 676
1D Compatibility (HY) -7600 + (ID) 1950
Total energy: -134752.0 ( -64.54 by residue)
QMean score : 0.210
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