Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKRLLLITLL--IGYIYPCVAQDKPIRTEESLEGTVIYKKTTTFEVDGYTYQCDVDDGSQFVTLYNKENKLTYEKIVYKDTGKTYIGSWSSNVIEYDRFMSQQADFIVDQAFTKAMADEIGKTELMITMLLSPNTGEVMEVNFNFFTFEPYAKVPLHVYREIE----VKLKEQIHFKPIEE-----------GKQLNYIMLAWMQKPQGKLPPLPPPGSLM------------------------------------------------- |
| 1LL3 Chain:A ((1-266)) | MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLT-TPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE--------ELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEMTHPQFLNVWWDIFTTSVVPLLQQFGL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LL3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -28994 for 1587 contacts (-18.3/contact) +
2D Compatibility (PS) -19535 + (NN) 7467 + (LL) 904
1D Compatibility (HY) -1600 + (ID) 1100
Total energy: -42858.0 ( -27.01 by residue)
QMean score : 0.056
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