Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGHHHHHHSHMQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKK
2VYI Chain:A ((89-202))
-----------AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA--
General information:
TITO was launched using:
RESULT:
Template:
2VYI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 13240 for 928 contacts (14.3/contact) +
2D Compatibility (PS) -12685 + (NN) -5604 + (LL) 652
1D Compatibility (HY) -4800 + (ID) 2050
Total energy: -11247.0 ( -12.12 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_2VYI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VYI-query.scw
PDB file :
Tito_Scwrl_2VYI.pdb
: