Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRD---IDDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFGEFHGED-RYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS |
| 1MDO Chain:A ((10-383)) | FLPFSRPAMGAEELAAVKTVLDSGWIT-TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGT-AIFSFHAIKNI-TCAEGGIVVTDNPQFADKLRSLKFHGLGVD--------QAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMAD---LPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRER--FPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -236234 for 3179 contacts (-74.3/contact) +
2D Compatibility (PS) -39790 + (NN) -20933 + (LL) 920
1D Compatibility (HY) -16400 + (ID) 5800
Total energy: -318237.0 ( -100.11 by residue)
QMean score : 0.542
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