Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVKKTVRF-GEQAAVPAIGLGTWYMGEHAAQRQQEVAALRAGIDHGLTVIDTAEMY-------ADGGAEEVVGQAIR--GLRDRVVLVSKVYPW------------HAGKAAMHRACENSLRRLQTDYLDMYLLHWRGD------------------IPLQETVEAMEKLVAEGKIRRWGVSNLDIEDMQALWRTA---DGEHCATNQVLYHLASRGIEYDLLPWCQQHSLPVMAYCPLAQA---GRLRD---------GLF------QH-------SDIINMANARGITVAQLLLAWVIRHPGV-LAIPKAASIEHVVQNAAALDIVLSGEELAQLDRLYPPPQRKNRLDMV |
| 1LQA Chain:A ((1-338)) | --MQYHRIPHSSLEVSTLGLGTMTFGEQN-SEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEIEAVH------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1LQA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -180611 for 2246 contacts (-80.4/contact) +
2D Compatibility (PS) -29121 + (NN) -13410 + (LL) 928
1D Compatibility (HY) -20400 + (ID) 4200
Total energy: -246814.0 ( -109.89 by residue)
QMean score : 0.515
|
|
|