Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGPVAGNYVHDFTANGTSSSFYTIAGNLSTSKGTATYNGKTLTQCLKMETATSISF--TAPSAGKLTLVFA--EAAA----TAKVDGNKVTA----SNG----IITVDLAQGAHTITKA----DA--CNLFYMEYAAHHHHHH
2BGO Chain:A ((36-121))
---------------------------------------------------SAVIWNVDVPVTGEYRINLTWSSPYSSKVNTLVMDGTALSYAFAEATVPVTYVQTKTLSAGNHSFGVRVGSSDWGYMNVHSLKLEL------
General information:
TITO was launched using:
RESULT:
Template:
2BGO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25402 for 354 contacts (-71.8/contact) +
2D Compatibility (PS) -6656 + (NN) 3433 + (LL) 2332
1D Compatibility (HY) -3600 + (ID) 550
Total energy: -30443.0 ( -86.00 by residue)
QMean score : 0.116
(partial model without unconserved sides chains):
PDB file :
Tito_2BGO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BGO-query.scw
PDB file :
Tito_Scwrl_2BGO.pdb
: