Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | AMIPLFKVAVSPTALDRVAEVFASGYLGQGPRVAEFESALAARLGNPRVVSVHSGTSGLCLALRLLDAPEERDEVLSTPLTFEATNWAILADGRRITWVDVDPATLTMDLDDLERKISPATRAIIVVHWTGYPVDLDRLAGILDRAEREHGFRPAVIEDCAHAWGASYRGVPLGSHGNMCVFSFQAL-HLTCGDGGLLTLPGDELHERAMLRRFYGIDRTADRLRGAYDVAEWGLKWHMTDLNAAIGLANLETVDEQLRLHRENAAFYDKELTGVPGLELLQRSPDREGSFYVYDVKVD------DRPAFHRKMEAAGIMAGLVSRRNDEHSCVA--HLRTSLPGLDSVYDRMVSLPVGWWLTEQDREHVVATIRSGW |
| 1MDO Chain:A ((10-382)) | -FLPFSRPAMGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGI-GEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGER----YGI--PVIEDAAHATGTSYKGRHIGARGT-AIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVD------QAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQI- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -210763 for 3122 contacts (-67.5/contact) +
2D Compatibility (PS) -38416 + (NN) -17215 + (LL) 1052
1D Compatibility (HY) -19600 + (ID) 5700
Total energy: -290642.0 ( -93.09 by residue)
QMean score : 0.463
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