Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
PYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQ----VLVILMDVFTDVEIFCDILEAANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISD---WRFVLSGSYSFTWLCGHVHRNILSKFT-GQAVELFDEEFRHLYA---SSKPVMGLKSP
1XDP Chain:A ((512-655))
-------------------LLYEMVDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASS-SGVPVNLLVRGMC-------SLIPNL-EGISDNIRAISIVDRY-----------LEHDRVYIFENGGDKKVYLSSADWMTRNIDYRIEVATPLLDPRLKQRVLDIIDILFSDTVKARYIDK----
General information:
TITO was launched using:
RESULT:
Template:
1XDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119789 for 991 contacts (-120.9/contact) +
2D Compatibility (PS) -14639 + (NN) -3668 + (LL) 2836
1D Compatibility (HY) -4400 + (ID) 850
Total energy: -140510.0 ( -141.79 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_1XDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XDP-query.scw
PDB file :
Tito_Scwrl_1XDP.pdb
: