Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ---------------------------------MFQKKTYAVFLILLLMMFTAACSGSKTSAEKKESETEKSSDIAQVKIKDVSYTLPSKYDKSTSDDQLVLKVNVAVKNTG-KDPLNVDSMDFTLYQGDTKMSD-----------TDPEDYSEKLQGSTINAD------KSVEGNLFFVVDKGKQYELNYT---PESYGDKKPKS---VTFKI--DGKDKKILATADKLQDSAKALSAYVDVLLFGKDNADFEKITGANKNEIVNDFNESAKDGYLSASGLSSTYADSKALDNIVNGIKEGLSKNSSIQAKTTSISKDEAIVEATVKPVDASSLSDRIEDKVKDYYSKNSSASYEEAVKY-----ALQVYPEEFKKLGPASSEKTVEVKMKKNDIDQWQLDMDDYRAAELVEAFIKE--- |
1NA6 Chain:A ((4-398)) | SVFHNWLLEIACENYFVYIKRLSANDTGATQVGLYIPSGIVEKL------FPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYN--SAHFGKTRNEKRITRWG---RGSPLQDPENTGALTLLAFKLDEQGGDCKEVNIWVCASTDEEDVIETAIGEVIPGALISGPAGQILGGL-----SLQQAPVNHKYILPEDWHLRFPSGSEIIQYAASHYDPDEQLLDRRRVEYDIFLLVEELH-------VLDIIRK--GFGSVDEFIALANSVSNRRKSRAGKSLELHLEHLFIEH--GLRHFATQAPDFL--FPSAGAYHPLRMLAVK----TTCKDRWRQILNHLFTLQEGVSLAQYREMRESGVRLVVPSSLHKKYPEAVRAELMT-----------------------LGAFIAELTG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NA6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 111158 for 1986 contacts (56.0/contact) +
2D Compatibility (PS) -31124 + (NN) -5425 + (LL) 5348
1D Compatibility (HY) -7600 + (ID) 2550
Total energy: 69807.0 ( 35.15 by residue)
QMean score : 0.185
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