Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKYLTIVIALVTLQSAFSQVISETFSSGRLNRKQKIGIYKPEKYTDRQAYPLIVVLNA------ETLMEPVVSMVRYYEQFGEMPKCIVVGVYEPKQEDVTVVEEVGRPINESARFFEFVSAELVPYIQGKYPIADLKGVIASEEAGFLANYYMLAEKKPTFNMIVSLNPVAL---PRMGEEFSHALAAGVPNRLFYYMATADVENKVVYDKAIQFERAMRSAPVHESVEYHFVDFKGSSVNAAKLQGIAQALDMCFDIYKPIGGKEFKTQMETLETGIYEYLENKYNTIYKQLGVKKVPILNDVMATYTAINSSQDWESLKKLAKYVESN-GYLKTAMPNFFLAEYYEKIGDDKKALKTYQKAYTEPNIDFITGDLINERITHLQATKRKSKHTKVIEPIEPTEEVAPAQEEQNPTDESNQN |
| 1R88 Chain:A ((33-299)) | -----------------AAPYENLMVPSPSMGRDIPVAFLAGGP-------HAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKG----ISVVAPAGGAYSMYTN-----WEQDGSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNN-------TRVWVWSPTNPGASDPAAMIG------------QAAEAMGNSRMFYNQYRS------------VGGH------NGHFDFPA-SGDNGWGS---WAPQLGAMSGDIVGAIR----------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1R88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134377 for 2357 contacts (-57.0/contact) +
2D Compatibility (PS) -27256 + (NN) -8632 + (LL) 11900
1D Compatibility (HY) -2800 + (ID) 1450
Total energy: -162615.0 ( -68.99 by residue)
QMean score : 0.223
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