Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GFDPEKAQCCLVENGQILTHGSG-GKGYGLASTGVTSGCYQWKFYIVKENRGNEGTCVGVSRWPVHDFN-HRTTSDMWLYRAYSGNLYHNGEQTLTL-SSFTQGDFITCVLDMEA-----RTISFGKNGEEPKLAFEDVDAAELYPCVMFYSSNPGEKVKICDMQMR
2YYO Chain:A ((6-159))
----SGFKHILVDGDTLSYHGNSGEVGCYVASRPLTKDSNYFEVSIVDSGVRGTI-AVGLVPQYYSLDHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMSPDGLFPAVGMHSL--GEEVRL------
General information:
TITO was launched using:
RESULT:
Template:
2YYO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48686 for 1129 contacts (-43.1/contact) +
2D Compatibility (PS) -15193 + (NN) -6990 + (LL) 224
1D Compatibility (HY) -1600 + (ID) 1450
Total energy: -73695.0 ( -65.27 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_2YYO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YYO-query.scw
PDB file :
Tito_Scwrl_2YYO.pdb
: