Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------------------------------------------------------------------------------------MYMKKLKFITLTLAIIITLPMLQSCLDDNDHQSR--SLVISTINQISEDSKEFYFTLDNGKTMFPSNS---QAWGGEKFENGQRAFVIFNELEQPVNGYDYNIQVR---------DITKVLTK-EIVTMDD--EENTEEKIGDDKINATY------------MWISKDKKYLTIEFQYYSTHSED---KKHFLNLVINNKE-----ADSAAENEDNTDDEYINLEFRHNSERDSPDHLGEGYVSF-----KLDKIEEQIEGKKGLNIRVRTLYDGIKNYKVQF-P---- |
| 1GVH Chain:A ((1-396)) | MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGEHLLATLDEMFSPGQEVLDAWGKAYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKG-YRIAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFTAKQLV-DLGV--------KQENIHYECFGPHKVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GVH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 38563 for 1484 contacts (26.0/contact) +
2D Compatibility (PS) -25106 + (NN) -11189 + (LL) 588
1D Compatibility (HY) 3200 + (ID) 1000
Total energy: 5056.0 ( 3.41 by residue)
QMean score : 0.231
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