Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKLHLKYLWIVLVACTLTACMNGGGDLAGKWQLRQYQY--AD--GT--------SEKVDSVFYNFQKGSFSAICLLKDGGLTTFFGNYSLKGAEISIILLPESVNDKNYDTYFGWPEGKCTFKVEDLSYSSLRLEYEGTKSIFRKF
4IAB Chain:A ((8-108))
-----------------------RPAELAGIWQLCHYVSEIPDVPGILKPSNTFKVLSDDGRIVNFTMI-------PGKDAIITGYGTYQQLTDNSYKESIEKNIHLPML------DHKDNILEFEIGDDGVMYLKY----------
General information:
TITO was launched using:
RESULT:
Template:
4IAB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6985 for 495 contacts (-14.1/contact) +
2D Compatibility (PS) -9493 + (NN) -1038 + (LL) 4428
1D Compatibility (HY) -2000 + (ID) 900
Total energy: -15988.0 ( -32.30 by residue)
QMean score : 0.239
(partial model without unconserved sides chains):
PDB file :
Tito_4IAB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IAB-query.scw
PDB file :
Tito_Scwrl_4IAB.pdb
: