Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
PYLKEKSSATVYFQTVKHNNIRDLVRRCITRTS-----QVLVILMDVFT-DVEIFCDILEAANKRGVFVCVLLDQGG-------VKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWR-------FVLSGSYSFTWLCGHVHRNILSKFTGQ-AVELFDEEFRHLYASSKPVMGLKSP
1XDP Chain:A ((350-496))
----------------------EHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAA-HNGKKVTVVVELQARFDEEANIHWAKRL-TEAG--------VHV-------IFSAPG----LKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRP-------
General information:
TITO was launched using:
RESULT:
Template:
1XDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140405 for 918 contacts (-152.9/contact) +
2D Compatibility (PS) -13959 + (NN) -5064 + (LL) 3028
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -160850.0 ( -175.22 by residue)
QMean score : 0.369
(partial model without unconserved sides chains):
PDB file :
Tito_1XDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XDP-query.scw
PDB file :
Tito_Scwrl_1XDP.pdb
: