Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSALNWKPFVYGGLASITAECGTFPID---LTKTRLQIQGQTNDAKFKEIRYRGMLHALVRI-GRE----EGLKALYSGIAPAMLRQASYGTIKIGTYQSLKRLFIERPEDETLPINVICGILSGVISSTIAN-PTDVLKIRMQAQSNTIQGGMIGNFMNIYQ-QEGTRGLWKGVSLTAQRAAIVVG----VELPVYDITKKHLILSGLMGDTVYTHFLSSFTCGLAGALASNPVDVVRTRMMNQRVLRDGRCSGYTGTLDCL-LQTWKNEGFFALY---KGFWPNWLRLGP----WNIIFFVTYEQLKKLDL |
| 3GN6 Chain:A ((22-321)) | -----FNPWTDAALDTIVNQALTLYAEMRVVPAHHDAFLAAIDTVSAKLRVLPGFLSLALKQMSGDSTMVKNYPETYKGV----LATAYLDGVAAGTQPYFYNLFVRFADGRAARAAGFEALFETHIHPLLHAMADGP---ELLAYRAVLQSVVAGDRHAIYRGAEEIRSFLRRPVELPERETVTVENHVMVPEDKHAAWEPQVAILLQVAQDTFEPQDEPSGVGLPGARDNRYYR----KALSTEILRNAHADG--GLRAYIMHGVWESVWDHENSHLDPRFLAAAGPVGAAAVVGPVEPFYLTRRLVVAD- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GN6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80572 for 2082 contacts (-38.7/contact) +
2D Compatibility (PS) -27863 + (NN) 4121 + (LL) 2076
1D Compatibility (HY) -2400 + (ID) 2000
Total energy: -106638.0 ( -51.22 by residue)
QMean score : -0.004
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