Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVKLLVAKILCMVGVFFFMLLGSLLPVKIIETDFEKAHRSKKILSLCNTFGGGVFLATCFNALLPAVREKLQKVLSLGHISTDYPLAETILLLGFFMTVFLEQLILTFRKEKPSFIDLETFNAGSDVGSD------SEYESPFMGGARGHALYVEPHGHGPSLSVQGLSRASPVRLLSLAF----ALSAHSVFEGLALGLQEEG----EKVVSLFVG--VAVHETLVA---VALGISMARSAMPLRDAAKLAVTVSAMIPLGIGLGLGIE--SAQGVPGSVASVLLQGLAGGTFLFITFLEIL--------------------AKELEEKSDRLLKVLFLVLGYTVLAGMVFLKW |
3RFA Chain:A ((17-349)) | KINLLDLNRQQMREFFKDLG--------------EKPFRADQVMKWMYHYCCDNFDE--MTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDR----ATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMS-YGFTTIVRKTRGD- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RFA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -190209 for 2239 contacts (-85.0/contact) +
2D Compatibility (PS) -29171 + (NN) 5222 + (LL) 1956
1D Compatibility (HY) -5200 + (ID) 2600
Total energy: -220002.0 ( -98.26 by residue)
QMean score : 0.151
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