Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRPVFILGIILLLVGCKQRDERVLMVDEQGSFAVGGTVLVDSLGHTFHGDHAYVFYQKPVG--ARKYP-LVFAHGVGQFSKTWETTPDGREGFQNIFLRRRFCVYLVDQPRRGNAGRGTESVTISPAFDEEVWFNRFRVGIWPDYFEGVQFKRDKETLDQYFRQMTPTIGTTDFEVYSDAYAALFDKI----GPGVFITHSQGGPVGWNTLLKTRNIKAIASYEPGGAV-------------------------------------PFPEG-QLPEEAKF---------IT--LS--------KKME-------GIEVPMSVFMEYTKVPIVIYYGDNLPETDERPELYEWTRRLRLMKIWAKMLNDQGGDVTVIHLPEVGLHGNTHFPMSDLNNIEVADLLSEWLHTKALD |
| 2HDW Chain:A ((74-366)) | ---------------------------------------ANRYGITLAADL-----YLPKNRGGDRLPAIVIGGPFGAVKEQSS------GLYAQTMAERGFVTLAFDPSYTGESGGQPR------------------------NV------ASPD---------------INTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRVKAVVTSTMYDMTRVMSKGYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSFMNMPILTYIKEISPRPILLIHGERAH----S---------RYFSE---TAYAAAAEPKELLIVPG-----ASHVDLYDRLDRIPFDRIAGFFDEH--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -81228 for 1860 contacts (-43.7/contact) +
2D Compatibility (PS) -24342 + (NN) -11465 + (LL) 8564
1D Compatibility (HY) -5200 + (ID) 1550
Total energy: -115221.0 ( -61.95 by residue)
QMean score : 0.323
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