Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRALSLLLALCLCLSLMPAASASVVESTVQVGPYTFEIWFDGTATLTRYDESLAGSTYADIPASVTDENGQEYPVTVIGEKAFEETNITGVTVPDSVISIGRLAFAYCNSLSDVKLSENLIYINELAFASCDALKEITIPASVEKMD-NPFRWSNALDTVYMEGMVAPE
4FDW Chain:A ((192-280))
----------------------------------------------------------------------------ITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYG-----
General information:
TITO was launched using:
RESULT:
Template:
4FDW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71527 for 637 contacts (-112.3/contact) +
2D Compatibility (PS) -9036 + (NN) 761 + (LL) 5900
1D Compatibility (HY) -5600 + (ID) 1050
Total energy: -80552.0 ( -126.46 by residue)
QMean score : 0.225
(partial model without unconserved sides chains):
PDB file :
Tito_4FDW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FDW-query.scw
PDB file :
Tito_Scwrl_4FDW.pdb
: