Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGHHHHHHSHMQQAISEKDRGNGFFKEGKYERAIECYTRGIA------------------ADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQ-AVTELSKIKK
3RKV Chain:A ((190-322))
------------SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT-
General information:
TITO was launched using:
RESULT:
Template:
3RKV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12002 for 866 contacts (13.9/contact) +
2D Compatibility (PS) -12602 + (NN) -6488 + (LL) 708
1D Compatibility (HY) -2400 + (ID) 1600
Total energy: -10380.0 ( -11.99 by residue)
QMean score : 0.366
(partial model without unconserved sides chains):
PDB file :
Tito_3RKV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RKV-query.scw
PDB file :
Tito_Scwrl_3RKV.pdb
: