Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLNLS-VDEVLTTTRSVRKRLDFDKPVPRDVLMECLELALQAPTGSNSQGWQWVFVEDAAKKKAIADVYLANARGYLSGPAPEYPDGDTRGERMGRVRDSATYLAEHMHRAPVLLIPCLKGR-E--------DESAVGGVSFWASLFPAVWSFCLALRSRGLGSCWTTLHLLDNGEHKVADVLGIPYDEYSQGGLLPIAYTQGIDFRPAKRLPAESVTHWNGW
1YWQ Chain:A ((2-199))
-SATTTNLKEAIVNRRSIRKVT-KNDAITKERIEEVLKTALHAPTSFNMQSGRMVVLMDGEH-EKFWDIVKETLRARVPA------------ENFEA---TVE-RLKGFHAGVGTVLFFEDQATVEKMQENAPLYKDQFPFWSHQGNAMLQHTVWMLLSAEGIGASLQHYNPI--VDAEVKETWNIP-AEWSLVGQMPFGEPNE-QPAERTFLPTEDVVKF---
General information:
TITO was launched using:
RESULT:
Template:
1YWQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106497 for 1366 contacts (-78.0/contact) +
2D Compatibility (PS) -20323 + (NN) -9719 + (LL) 124
1D Compatibility (HY) -4400 + (ID) 1700
Total energy: -142515.0 ( -104.33 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_1YWQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YWQ-query.scw
PDB file :
Tito_Scwrl_1YWQ.pdb
: