Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSLVKIMGSFLALSLIMIFSSCIVNEHVDEGNIKENAVRMMECIVNKDSEKLFDFYNKDMKDNYKDSSLDEIRQLFEYIDGAITSYNYEGKGGGQEAKNDGIICYYSCHPEFDFTTETGQEYTISFSYHYIWNEHPEYEGINMIQICKDGNWGEKLIIGRNYYKE
4MJD Chain:A ((4-54))
-------------------------------MDRVATARAYYRALDEHDYDLLSDVLAPDFVHDRPDRTIEGRERFVRFMRE------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4MJD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6481 for 265 contacts (-24.5/contact) +
2D Compatibility (PS) -5541 + (NN) -2697 + (LL) 6856
1D Compatibility (HY) -2000 + (ID) 300
Total energy: -10163.0 ( -38.35 by residue)
QMean score : 0.128
(partial model without unconserved sides chains):
PDB file :
Tito_4MJD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MJD-query.scw
PDB file :
Tito_Scwrl_4MJD.pdb
: