Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGPVAGNYVHDFTANGTSSSFYTIAGNLSTSKGTATYNGKTLTQCLKMETATSISF--TAPSAGKLTLVF--AEA---AA--TAKVDGNKV----T--ASNG-------IITVDLAQGAHTITKADACNLFYMEYAAHHHHHH
2VZP Chain:A ((39-111))
---------------------------------------------------SSVEWTVTVPSAGTYDVVVRYANGTTTSRPLDFSVNGSISASGVAFGSTGTWPAWTTKTVRVTLAAGVNKIKA-------------------
General information:
TITO was launched using:
RESULT:
Template:
2VZP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19330 for 242 contacts (-79.9/contact) +
2D Compatibility (PS) -5613 + (NN) 941 + (LL) 3612
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -24740.0 ( -102.23 by residue)
QMean score : 0.198
(partial model without unconserved sides chains):
PDB file :
Tito_2VZP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VZP-query.scw
PDB file :
Tito_Scwrl_2VZP.pdb
: