Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPGCPCPGCGMAGPRLLFLTALALELLERAGGSQPALRSRGTATACRLDNKESESWGALLSGERLDTWICSLLGSLMVGLSGVFPLLVIPLEMGTMLRSEAGAWRLKQLLSFALGGLLGNVFLHLLPEAWAYTCSASPGGEGQSLQQQQQLGLWVI-AGILTFLALEKMFLDSKEEGTSQAPNKDPTAAAAALNGGHCLAQPAAEPGLGAVVRSIKVSGYLNLLANTIDNFTHGLAVAASFLVSKKIGLLTTMAILLHEIPHEVGDFAILLRAGFDRWSAAKLQLSTALGGLLGAGFAICTQSPKGVVGCSPAAEETAAWVLPFTSGGFLYIALVNVLPDLLEEE----DPWRSLQQLLLLCAGIVVMVLFSLFVD |
4LXU Chain:A ((1-273)) | ---GHMIKICIAGKNNIAVNSLQFILKNYFEADQIVVIPNKN-------DKGIDSWQKSLLKFALDNNIKIVT---LDEIYNIEQIIFFSLEFDQIIKIEN--FKSDRLFNIHFSAL---------PKYKGVFTSITPILNNE---LESGVTLHRIDNGIDTGNIIDQHCFP---------IDINDTARDLYFN-----YLKYGESIFKKNIQTIINNSYKDLKQTNINS---------SYFSRKDINLV-------HKINFKKTSFEIHNQIR----------------------------------------------AFIFQEYQLPIINNSKIIKSILANEFIGYNVFEEFENYFIISGIDGFKIIAQKLNK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LXU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155323 for 2138 contacts (-72.6/contact) +
2D Compatibility (PS) -28528 + (NN) -5740 + (LL) 6472
1D Compatibility (HY) -14000 + (ID) 2250
Total energy: -199369.0 ( -93.25 by residue)
QMean score : 0.086
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