Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYMKKLKFITLTLAIIITLPMLQSCLDDNDHQSRSLVISTINQISEDSKEFYFTLDNGKTMFPSNSQAWGGEKFENGQRAFVIFNELEQPVNGYDYNIQVRDITKVLTKEIVTMDDEENTEEKIGDDKINA--TYMWISKDKKYLTIEFQYYSTHSEDKKHFLNLVINNKEADSAAENEDNTDDEYINLEFRHNSERDSPDHLGEGYVSFKLDKIEEQIEGKKGLNIRVRTLYDGIKNYKVQFP
4J8Q Chain:A ((6-207))
----------------------------DGYSLGDIAVDWATVRVVGGDTYSLNADRWGTLWPAATAIPF-YKPIDGQRVITYFNPLYDNYEGYDHAVKVEHNYNVLTKQVEDLTAE--NESEFGNDPVWVNKDMMWIG--GGYLNVIFRQNL------KHLVSLVRDMRAT-----AAEGEDDGYIHLELRYKTYDD----QANGAVSFNLNSL--DLTGKKGIKVKLNSVKDGETEVVFNLK
General information:
TITO was launched using:
RESULT:
Template:
4J8Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67431 for 1361 contacts (-49.5/contact) +
2D Compatibility (PS) -20603 + (NN) -8027 + (LL) 3364
1D Compatibility (HY) -12000 + (ID) 2550
Total energy: -107247.0 ( -78.80 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_4J8Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J8Q-query.scw
PDB file :
Tito_Scwrl_4J8Q.pdb
: