Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLKKILGLLGLALAAAFVLTACGQKNDKNTLTVGVMTMTDSDKERW-DKIEELLKKENIKLKFKEFTDYSQPNKALKNGEIDINSFQHYNFLNNWNKENKGDLVTVAETYISPINLFSGTENGKAKYSSAKEIPNGGQIAIPNDATNESRALYVLQDAGLIKLNVS-GDELATVKNIKSNPKNLDIKEVDASQTARNLASVDAAVVNNSYAVPAKIDFKTSLYKEKVNEGSKQWINIIAAQKNWKKSKKAAAIKKLIKAYHTDAVKKVIKKTAKGVDEPVW |
3IR1 Chain:A ((1-238)) | -----------------------------KEIVFGTTVG--DFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVPTAPLGLYP------GKLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAENLKNIKIVELEAAQLPRSRADVDFAVVNGNYAISSGMKLTEAL-FQEPS---FAYVNWSAVKTA---DKDSQWLKDVTEAYNSDAFKAYAHKRFEGYKSPAA |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3IR1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -12681 for 1963 contacts (-6.5/contact) +
2D Compatibility (PS) -24975 + (NN) -8313 + (LL) 2616
1D Compatibility (HY) -13600 + (ID) 3800
Total energy: -60753.0 ( -30.95 by residue)
QMean score : 0.382
|
|
|