Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIPFNA-----PPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKEAEIMAVFHY-IPLHGCPAGEHFGEFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS |
| 3NYT Chain:A ((1-359)) | MIEFIDLKNQQARIKDKIDAGIQRVLRHGQY-ILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAIIPVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQD---------RRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLSLKQV---G-IGTPFIEVNNISVYAQYTVRM---DNRESVQASLKAAGVPTAVHYPIPLNKQPAVADE---KAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NYT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -250056 for 3149 contacts (-79.4/contact) +
2D Compatibility (PS) -38943 + (NN) -18361 + (LL) 1692
1D Compatibility (HY) -17600 + (ID) 5250
Total energy: -328518.0 ( -104.32 by residue)
QMean score : 0.529
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