Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGPVAGNYVHDFTANGTSSSFYTIAGNLSTSKGTATYNGKTLTQCLKMETATSISF--TAPSAGKLTLVF--AEA-A--A--TAKVDGNKVT-----ASNG-------IITVDLAQGAHTITKAD-----ACNLFYMEYAAHHHHHH
2W3J Chain:A ((36-127))
------------------------------------------------AVGASIVWSLSAASAKTYTAQIRFGNGGTSARRATVVVNDSQIKTLDFPTNSNWTQWQTVNVDIPLKAGTNSIKLVAETADGLANIDSIRVT-------
General information:
TITO was launched using:
RESULT:
Template:
2W3J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28202 for 359 contacts (-78.6/contact) +
2D Compatibility (PS) -6935 + (NN) 3925 + (LL) 2176
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -32436.0 ( -90.35 by residue)
QMean score : 0.246
(partial model without unconserved sides chains):
PDB file :
Tito_2W3J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W3J-query.scw
PDB file :
Tito_Scwrl_2W3J.pdb
: