Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | SNAMPFLPDPGEPSPL-KVVIAGAGYVGTCLAVTLAGRGAEVVAVDSDPGTVADLRAGRCRLPEPGLAGAVRDLAATGRLTASTSYD-PVGAADVVIVTVGTPTDAGHEMVTDQLVAACEQIAPRLRA---GQLVILKSTVSPGTTRTLVAPLLESGGLVHERDFGLAFCPERLAEGVALAQVRTLPVVVGGC-GPRSAAAAERFWRSALGVDVRQVPSAESAEVVKLATNWWIDANVAIANELARYCAVLGVDVLDVIGAANTLPKGSSMVNLLLPGVGVGGSCLTKDPWMAWRDGRDRGVPLRTVETARAVNDDMPRHTAAVIADELVKLGRDRNDTTIAVLGAAFKNDTGDVRNTPVRGVVAALRDSGFRVRIFDPLADPAEIVARFG--TAPAASLDEAVSGAGCLAFLAGHRQFHELDFGALAERVDEPCLVFDGRMHLPPARIRELHRFGFAYRGIGR |
| 3VTF Chain:A ((18-443)) | ------------GSHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAG--GVKFSVASNPEFLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDA-PK-LVMKPREAELVKYASNVFLALKISFANEVGLLAKRLGVDTYRVFEAVGLDKRI--GRHYFGAGLGFGGSCFPKDTLAFIRFGESLGLEMAISKAVLRVNEYMPRYAVQLLEERLG----GLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKA-RAVLGDSVTYVEDPQALLDQVEGVIIATAWPQYEGLDY-------R-GKVVVDGRYVKKARE-------AKIYEGVAW |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VTF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -271969 for 3724 contacts (-73.0/contact) +
2D Compatibility (PS) -45905 + (NN) -17429 + (LL) 2484
1D Compatibility (HY) -21200 + (ID) 6400
Total energy: -360419.0 ( -96.78 by residue)
QMean score : 0.439
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