Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVSSNGGAIKAVIYDCDGVMFDSFEANLAFYQRIMEMMGRPR-LSRDNEEQMRILHTYANREVLAHFFP------------------------SPGDWEEAVRCAGAIDYRELVPLMIMEEGFREALDTLKG-RVGLGVCTNRSTS-MDMVLRLFSLDSYFSIVMTASRVTNPKPHPEPLLKVLEHFGIGPREALFVGDSEVDRLSAEAAGVPFVAYKAP------L---PAAYRMEHHREIIDLLG
2HI0 Chain:A ((2-237))
-------MKYKAAIFDMDGTILDTSADLTSALNYAFEQTGHRHDFTV---EDIKNFFGSGVVVAVTRALAYEAGSSRESLVAFGTKDEQIPEAVTQTEVNRVLEVFKPYYADHCQIKTGPFPGILDLMKNLRQKGVKLAVVSNKPNEAVQVLVEELFP-GSFDFALGEKSGIRRKPAPDMTSECVKVLGVPRDKCVYIGDSEIDIQTARNSEMDEIAVNWGFRSVPFLQKHGATVIVDTAEKLEEAI-
General information:
TITO was launched using:
RESULT:
Template:
2HI0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165289 for 1706 contacts (-96.9/contact) +
2D Compatibility (PS) -22045 + (NN) -14757 + (LL) -64
1D Compatibility (HY) -8000 + (ID) 1500
Total energy: -211655.0 ( -124.07 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_2HI0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HI0-query.scw
PDB file :
Tito_Scwrl_2HI0.pdb
: