Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GFDPEK-AQCCLVEN-GQILTHGS------------GGKGYGLASTGVTSGCYQWKFYIVKENRGNEGTCVGVSRWPVHDFN----HRTTSDMWLYRAYSGN--LYHNGEQTLTLSSFTQGDFITCVLDMEARTISFGKNG--EEPKLAFEDVDAAELYPCVMFYSSNPGEKVKICDMQMR
4B8E Chain:A ((27-193))
-FDYNTAHNKVSLSNKYTTASVSDGLQHYRSHPQRFTYCSQVLGLHCYKNGIHYWEVELQK---NNFC-GVGICYGSMERQGPESRLGRNPNSWCVEWFNNKISAWHNNVEKT--LPSTKATRVGVLLNCDHGFVIFFAVTEKVHLMYKFKVDFTEALYPAFWVFS--AGTTLSIC-----
General information:
TITO was launched using:
RESULT:
Template:
4B8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69753 for 1081 contacts (-64.5/contact) +
2D Compatibility (PS) -15960 + (NN) -7276 + (LL) 684
1D Compatibility (HY) -6800 + (ID) 1200
Total energy: -100305.0 ( -92.79 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_4B8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B8E-query.scw
PDB file :
Tito_Scwrl_4B8E.pdb
: