Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------MAMHFIFSDTAVLLFDFWSVHSPAGMALSVLVLLLLA-VLYEGIKVGKAKLLNQVLVNLPTSISQQTIAETDGDSAGSDSFPVGRTHHRWYLC-------HFGQSLIHVIQVVIGYFIMLAVMSYNTWIFLGVVLGSAVGYY-LAYPLL-S-TA
1Q9C Chain:A ((6-177))
LPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPR-SASDVEERVQKSFPHPIDKWAIADAQSAI---ESLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEIT-KQDIKVAMCADKVLMDMFH
General information:
TITO was launched using:
RESULT:
Template:
1Q9C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90017 for 1018 contacts (-88.4/contact) +
2D Compatibility (PS) -13440 + (NN) 2152 + (LL) 312
1D Compatibility (HY) 8000 + (ID) 300
Total energy: -93293.0 ( -91.64 by residue)
QMean score : 0.153
(partial model without unconserved sides chains):
PDB file :
Tito_1Q9C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q9C-query.scw
PDB file :
Tito_Scwrl_1Q9C.pdb
: