Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGTQKVTPALIFAITVATIGSFQFGYNTGVINAPEKIIKEFINKTLTDKGNAPPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLIVNLLAVTGGCFMGLCKVAKSVEMLILGRLVIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVVGILVAQIFGLEFILGSEELWPLLLGFTILPAILQSAALPFCPESPRFLLINRKEEENAKQILQRLWGTQDVSQDIQEMKDESARMSQEKQVTVLELFRVSSYRQPIIISIVLQLSQQLSGINAVFYYSTGIFKDAGVQEPIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAFCSTLMTVSLLLKDNYNGMSFVCIGAILVFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPSAAHYLGAYVFIIFTGFLITFLAFTFFKVPETRGRTFEDITRAFEGQAHGADRSG---KDGVMEMNSIEPAKETTTNV------------------ |
3WDO Chain:A ((1-453)) | --DYKMTP-----------GERRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQGAS--EALIGIAIGIYGLTQAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAAL---SDSIWGIILGRALQGS--GAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLG-PIITHKLGLHALFWMIAILATTGIALTIWVVPNSSTHVL------------------------------------NRESGMVKGSFSKVLAEPRLLKLNFGIMCLHML--LMSTFVALPGQLADAGFPAAEHWKVYLATMLIAFGSVVPFIIYAEVKRKMKQV----FVFCVGLIVVAEIVLWNAQTQFWQLVVGVQLFFVAFNLMEALLPSLISKE-SPAGYKGTAMGVYSTSQFLGVAIGGSLGGWIDGMFDGQGVFLAGAMLAAVWLAVASTMKEPPYVSSLRIEIPADIAANEALKVRLLETEGVKEVLIAEEEHSAYVKIDSKVTNRFEVEQAIRQAL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3WDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -363793 for 3722 contacts (-97.7/contact) +
2D Compatibility (PS) -43330 + (NN) 1769 + (LL) 5412
1D Compatibility (HY) -20400 + (ID) 3750
Total energy: -424092.0 ( -113.94 by residue)
QMean score : 0.259
|
|
|