Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MALDFLAGCAGGVAGVLVGHPF--DTVKVRLQVQSVEKPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQDAGPAR-T---YKGSLDCLAQIYGHEGLRGVNRGMV-STLLRETPSFGVYFLTYDA--LTRALGCEPGDRLLVPKLLLAGGTSGIVSWLSTYP--------VDVVKSRLQADGLRGAPRYRGILDCVHQS-YRAEGWRVFTRGLASTLLRAFPVNAATF------ATV-TVVLTYARGEEAGPEGEAVPA-APAGPALAQPSSL--- |
| 5AFR Chain:A ((8-410)) | LANELIEFVAATVTGIKNSPKENEQAFIDYLHCQYLERFQFFLGLFVFLFIVTIDIAIYDANLANSTLLIIKQISAIYNAGNLASIITHGVSSVFGQLIKSDIDKTRRKLDDISKQFQQLHTSIETPDLLAMVPSIIKLAVSKGATSHDYANYLPSNDLESMRFLNILQSIANKWFLVLKQTLFLDEVEFWSNFYEVLKSLIEQTQSQEFQVCLSVLTNAKRFHNLTNLLNEGSLSDKFKLADKYNQFLSSIPIDEDLQELFPVLASSLKKFRYSGYPVQRFVVLMDKISQEVMDAILSNLSYGSFLGLYEKSAGMIEEWDDIVQDVNLLIR |
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General information:
TITO was launched using:
| RESULT:
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Template: 5AFR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -34542 for 1704 contacts (-20.3/contact) +
2D Compatibility (PS) -30346 + (NN) 8666 + (LL) 0
1D Compatibility (HY) -12000 + (ID) 2050
Total energy: -70272.0 ( -41.24 by residue)
QMean score : -0.036
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