Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQMDNRLPPKKVPGFCSFRYGLSFLVHCCNVIITAQRACLNLTMVVMVNSTDPHGLPNTSTKKLLDNIKNPMYNWSPDIQGIILSSTSYGVIIIQVPVGYFSGIYSTKKMIGFALCLSSVLSLLIPPAAGIGVAWVVVCRAVQGAAQGIVATAQFEIYVKWAPPLERGRLTSMSTSGFLLGPFIVLLVTGVICESLGWPMVFYIFGACGCAVCLLWFVLFYDDPKDHPCISISEKEYITSSLVQQVSSSRQSLPIKAILKSLPVWAISTGSFTFFWSHNIMTLYTPMFINSMLHVNIKENGFLSSLPYLFAWICGNLAGQLSDFFLTRNILSVIAVRKLFTAAGFLLPAIFGVCLPYLSSTFYSIVIFLILA-------GATGSFCLGGVFINGLDIAPRYFGFIKACSTLTGMI--GGLIASTLTGLILK-QDPESAWFKTFILMAAINVTGLIFYLIVATAEIQDWAK-EKQHTRL--------------------- |
| 3WDO Chain:A ((1-453)) | ---DYKMTP-----------GERRATWGLGTVFSLRMLGMFMVLPVLTTYG------------------MALQGASEALIGIAIGIYGLTQAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIA--ALSDSIWGIILGRALQGS--GAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITHKLGLHALFWMIAIL-ATTGIALTIWVVPNSSTHV---LNRESGMVKGSFSKVLAEPRLLKLNFGIMCLHMLLMST---FVALPGQLADAGFPAAEHWKVYLATMLIAFGSVVPFI---IYAEVKRKMKQVFVFCVGLIVVAEIVLWNAQTQFWQLVVGVQLFFVAFNLMEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIGGSLGGWIDGMFDGQGVFLAGAMLAAVWLAVASTMKEPPYVSSLRIEIPADIAANEALKVRLLETEGVKEVLIAEEEHSAYVKIDSKVTNRFEVEQAIRQAL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3WDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -408293 for 3533 contacts (-115.6/contact) +
2D Compatibility (PS) -41206 + (NN) 10262 + (LL) 1716
1D Compatibility (HY) -23600 + (ID) 3200
Total energy: -464321.0 ( -131.42 by residue)
QMean score : 0.209
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