Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGHHHHHHSHMVVIHPDPGRELSPEEAHRAGLIDWNMFVKLRSQECDWEEISVKGPNGE-----SSVIHDRKSGKKFSIEEALQSGRLTPAHYDRYVNKDMSIQELAVLVSGQK
1D9N Chain:A ((10-62))
------------------------------------------ALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIR----------SKVELTRYLGPACDLTLF--------
General information:
TITO was launched using:
RESULT:
Template:
1D9N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2820 for 266 contacts (-10.6/contact) +
2D Compatibility (PS) -5151 + (NN) -2561 + (LL) 4240
1D Compatibility (HY) -3600 + (ID) 300
Total energy: -10192.0 ( -38.32 by residue)
QMean score : 0.210
(partial model without unconserved sides chains):
PDB file :
Tito_1D9N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D9N-query.scw
PDB file :
Tito_Scwrl_1D9N.pdb
: