Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLKKILGLLGLALAAAFVLTACGQKNDKNTLTVGVMTMTDSDKERWDKIEELLKKENIKLKFKEFTDYSQPNKALKNGEIDINSFQHYNFLNNWNKENKGDLVTVAETYISPINLFSGTENGKAKYSSAKEIPNGGQIAIPNDATNESRALYVLQDAGLIKLNVSGDELATVKNIKSNPKNLDIKEVDASQTARNLAS--VDAAVVNNSYAVPAKIDFKTSLYKEKVNEGSKQWINIIAAQKNWKKSKKAAAIKKLIKAYHTDAVKKVIKKTAKGVDEPVW |
4NTL Chain:A ((6-247)) | ----------------------------DKEITVAVQLE--SSKDILEIAKKEAEKKGYKINIMEVSDNVAYNDAVQHDEADANFAQHQPFMEMFNKEKKADLVAVQPIYYFAGGFYS------KEYQDAKDLPENAKVGIPSDPTNEGRALAILNANGVIKLKEGVGFNGTVADVVENPKNITFESIDLLNLAKAYDEKDIAMVFCYPAYLEPAGLTTKDAILLEDKEA-SKHYALQVVTRKG---EKDSEKIKVLKEAMTTKEVAEYIKKNSKGANIPAF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NTL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -33315 for 1990 contacts (-16.7/contact) +
2D Compatibility (PS) -25627 + (NN) -9906 + (LL) 2384
1D Compatibility (HY) -11600 + (ID) 3700
Total energy: -81764.0 ( -41.09 by residue)
QMean score : 0.411
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