Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRALSLLLALCLCLSLMPAASASVVE---------STVQVGPYTFEIWF-DGT-ATLTRYDESLAGSTYADIPASVTDENG---QEYPVTVIGEKAFEET-NITGVTVPDSVISIGRLAFAYCNSLSDVKLSENLIYINELAFASCDALKEITIPASVEKMD-NPFRWSNALDTVYMEGMVAPE
4GT6 Chain:A ((33-191))
--------------------EHRITIPAQVTHGAYIYPVSKIGDRVFCNYKYVLTSVQIPDTVTEIGSNAFYNCTS-LKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTG-TALTQIHIPA-----
General information:
TITO was launched using:
RESULT:
Template:
4GT6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79340 for 1084 contacts (-73.2/contact) +
2D Compatibility (PS) -14242 + (NN) 1676 + (LL) 2708
1D Compatibility (HY) -7600 + (ID) 1450
Total energy: -98248.0 ( -90.63 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_4GT6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GT6-query.scw
PDB file :
Tito_Scwrl_4GT6.pdb
: