Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MITYKKLLDELKKEIG---PIAKIFLNKAMESLGYDDVDDSNYKEILSVLKMNKELREYVEIVEERLEKEG------
1RP3 Chain:B ((2-88))
VNRIELSRLIGLLLETSGTNKIEDKVTLSKIAQELSKNDVEEKDLEKKVKELKEKIEKGEY-EVSDEKVVK-GLIEFFT
General information:
TITO was launched using:
RESULT:
Template:
1RP3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86 for 289 contacts (-0.3/contact) +
2D Compatibility (PS) -7482 + (NN) -7673 + (LL) 296
1D Compatibility (HY) -1600 + (ID) 950
Total energy: -17495.0 ( -60.54 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_1RP3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RP3-query.scw
PDB file :
Tito_Scwrl_1RP3.pdb
: