Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFQKKTYAVFLILLLMMFTAACSGSKTSAEKKESETEKSSDIAQVKIKDVSYTLPSKYDKST---SDDQLVLKVNVAVKNTGKDPLNVDSMDFTLYQGDTKMSDTDPEDYSEKL-QGSTINADKSVEGNLFFVVDKGKQYELNYTPESYGDKKPKSVT--FKIDGKDKKILATADKLQDSAKALSAYVDVLLFGKDNADFEKITGANKNEIVNDFNESAKDGYLSASGLSSTYADSKALDNIVNGIKEGLSKNSSIQAKTTSISKDEAIVEA-----TVKPVDASSL---SDRIEDKVKDYYSKNSS-ASYEEAVKYALQVYPEEFKKLGPASSEKTVEVKMKKNDIDQWQLDMDDYRAAELVEAFIKE-- |
| 1RYP Chain:G ((1-244)) | ------------------------------------------------------GTGYDLSNSVFSPD-------------GR-----------NFQ---------VEYAVKAVENGTTSIGIKCNDG-VVFAVEKLI---------TSKLLVPQKNVKIQVVDRH----------------------IGCVYSGLIPDGRHLV-NRGREEAASFKKLYKT------PIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHED-NKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQKEIN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RYP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 60879 for 1838 contacts (33.1/contact) +
2D Compatibility (PS) -24486 + (NN) -8653 + (LL) 9100
1D Compatibility (HY) 800 + (ID) 1600
Total energy: 36040.0 ( 19.61 by residue)
QMean score : 0.232
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