Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | SNAMPFLPDPGEPSPLKVVIAGAGYVGTCLAVTLAGRGAEVVAVDSDPGTVADLRAGRCRLPEPGLAGAVRDLAATGRLTASTSYD-PVGAADVVIVTVGTPTDAGHEMVTDQLVAACEQIAPRL---RAGQLVILKSTVSPGTTRTLVAPLLES-GGLVHERDFGLAFCPERLAEGVALAQVRTLPVV-VGGCGPRSAAAAERFWRSALGVDVRQVPSAESAEVVKLATNWWIDANVAIANELARYCAVLGVDVLDVIGAANTLPKGSSMVNL----LLPGVGVGGSCLTKDPWMAWRDGRDRGVPLRTVETARAVNDDMPRHTAAVIADELVKLGRDRNDTTIAVLGAAFKNDTGDVRNTPVRGVVAALRDSGFRVRIFDPLADPAEIVA---RFG------T--APAASLDEAVSGAGCLAFLAGHRQFHELDFGALAERVDEPCLVFDGRMHLPPARIRELHRFGFAYRGIGR |
1MV8 Chain:A ((1-435)) | ---------------MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYREL-D-APIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHK----LNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSH--------DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVD-----LVNKTPSGKKLVDLVGFMPHTT-------TAQAEGIC- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MV8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -258182 for 3274 contacts (-78.9/contact) +
2D Compatibility (PS) -44740 + (NN) -13076 + (LL) 1752
1D Compatibility (HY) -22000 + (ID) 5700
Total energy: -341946.0 ( -104.44 by residue)
QMean score : 0.427
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