Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMHFIFSDTAVLLFDFWSVHSPAGMALSVLVLLLLAVLYEGIKVGKAKLLNQVLVNLPTSISQQTIAETDGDSAGSDSFPVGRTHHRWYLCHF----------GQSLI----HVIQVVIGYFIMLAVMSYNTWIFLGVVLGSAVGYYLAYPLLSTA--
1WYK Chain:A ((1-152))
MRLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSK-LKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLG------GADEGTRTALSVVTWNSKGKTIKTTPEGTEEW
General information:
TITO was launched using:
RESULT:
Template:
1WYK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141734 for 972 contacts (-145.8/contact) +
2D Compatibility (PS) -13958 + (NN) 5698 + (LL) 784
1D Compatibility (HY) -400 + (ID) 1100
Total energy: -150710.0 ( -155.05 by residue)
QMean score : 0.170
(partial model without unconserved sides chains):
PDB file :
Tito_1WYK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WYK-query.scw
PDB file :
Tito_Scwrl_1WYK.pdb
: