Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPGCPC-PGCGMAGPRLLFLTALALELLERAGGSQPALRSRGTATACRL-DNKESESWGALLSGERLDTWICSLLGSLMVGLSGVFPLLVIPLEMGTMLRSEAGAWRLKQLLSFALGGLLGNVFLHLLPEAWAYTCSASPGGEGQSLQQQQQLGLWVIAGILTFLALEKMFLDSKEEGTSQAPNKD-PTAAAAALNGGHCLAQPAAEPGLGAVVRSIKVS-GYLNLLANTI-DNFTHGLAVAASFLVSKKIGLLTTMAILLHEIPHEVGDFAILLRAGFDRW-SAAKLQLSTALGGLLGAGFAICTQSPKGVVGCSPAA-EETAAWVLPFTSGGFLYIALVNVLPDLLEEEDPWRSLQQLLLLCAGIVVMVLFSLFVD |
| 4QPV Chain:A ((17-290)) | -SVPEEMEASKYVGQG--FQPPAEKDAIEFSKKHKDKIAKRGEQF---FMDN-----FG-------LKVKATNVVGS----------------------------------------GDGVEVFVHCDDHDIVFNASIPF---------------------------DKSIIESDSSLRSEDKGDDMSTLVGTVLSGFEYRAHKEELDNLTEVLKEYKSKYKYTGYTENAIMKTQNSGFRNEYYYLTAIPYT-LDEYKRYFQPLIKED-------DKSFRDGMRNSKKQLKDKSRPYVVT--TLFSTKDNFTKDNTIDEMIDFSEVLKKKKNIPHDLNVSLQISNKYINTKRPNYSKKEV------IEVGVFNHE--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QPV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -149096 for 2117 contacts (-70.4/contact) +
2D Compatibility (PS) -28220 + (NN) -5343 + (LL) 8756
1D Compatibility (HY) -4000 + (ID) 2150
Total energy: -180053.0 ( -85.05 by residue)
QMean score : 0.162
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