Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRALSLLLALCLCLSLMPAASASVVESTVQVGPYTFEIWFDGTATLTRYDESLAGSTYADIPASVTDENGQEYPVTVIGEKAFEET-NITGVTVPD-SVISIGRLAFAYCNSLSDVKLSENLIYINELAFASCDALKEITIPASVEKMD-NPFRWSNALDTVYMEGMVAPE
4FDW Chain:A ((113-259))
------------------KGYNEIILPNSVKSIPKDAFRNSQIAKVVLNEGLKSIGDMAFFN--STVQEIVFP-STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNGV---
General information:
TITO was launched using:
RESULT:
Template:
4FDW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65263 for 1079 contacts (-60.5/contact) +
2D Compatibility (PS) -14573 + (NN) 1234 + (LL) 2492
1D Compatibility (HY) -4800 + (ID) 1350
Total energy: -82260.0 ( -76.24 by residue)
QMean score : 0.205
(partial model without unconserved sides chains):
PDB file :
Tito_4FDW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FDW-query.scw
PDB file :
Tito_Scwrl_4FDW.pdb
: