Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIFLAILDLKSLVLNAINYWGPKNNNGIQGGDFGYPISEK-QIDTSIITS-THPRLIPHDLTIPQNLETIFTTTQVLTNNTDLQQS-QTVSFAKKTTTTTSTSTTNGWTEGGKISDTLEEKVSVSIPFIGEGGGKNSTTIEANFAHNSSTTTFQQASTDIEWNISQPVLVPPRKQVVATLVIMGGNFTIPMDLMTTIDSTEHYSGYPILTWISSPDNSYNGPFMSWYFANWPNLPSGFGPLNSDNTVTYTGSVVSQVSAGVYATVRFDQYDIHNLRTIEKTWYARHATLHNGKKISINNVTEMAPTSPIKTN |
| 3G4N Chain:A ((141-365)) | -----------DVTRDGDGWVIRGNN--DGGCDGYRCGDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRYDTA--TNWSKTNTYGLSEKVTTKN----KFKWPLVGETE----LSIEIAANQSWASQNGGSTTTS--LSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDKRYIP-------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3G4N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 729 for 1242 contacts (0.6/contact) +
2D Compatibility (PS) -23793 + (NN) -11216 + (LL) 6100
1D Compatibility (HY) -400 + (ID) 2100
Total energy: -30680.0 ( -24.70 by residue)
QMean score : 0.111
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