Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MITYKKLLDELKKEIGPIAKIFLNKAMESLGYDDVDDSNYKEILSVLKMNKELREYVEIVEERLEKEG
1VF6 Chain:A ((12-69))
VLQVLDRLKMKLQEK-GDTSQ---NEKLSMF-YETLKSPLFNQILTLQQSIKQLKGQLNHILE------
General information:
TITO was launched using:
RESULT:
Template:
1VF6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3680 for 256 contacts (14.4/contact) +
2D Compatibility (PS) -6270 + (NN) -4895 + (LL) 920
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -10265.0 ( -40.10 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_1VF6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VF6-query.scw
PDB file :
Tito_Scwrl_1VF6.pdb
: