Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | AMIPLFKVAVSPTALDRVAEVFASGYLGQ-GPRVAEFESALAARLGNPRVVSVHSGTSGLCLALRLLDAPEERDEVLSTPLTFEATNWAILADGRRITWVDVDPATLTMDLDDLERKISPATRAIIVVHWTGYPVDLDRLAGILDRAEREHGFRPAVIEDCAHAWGASYRGVPLGSHGNMCVFSFQALH-LTCGDGGLLTLPGDELHERAMLRRFYGIDRTADRLRGAYDVAEWGLKWHMTDLNAAIGLANLETVDEQLRLHRENAAFYDKELTGVPG-LELLQRSPDREGSFYVYDVKVD-----DRPAFHRKMEAAGIMAGLVSRRNDEHSCVAH-LRTSLPGLDSVYDRMVSLPVGWWLTEQDREHVVATIRSGW |
| 3DR4 Chain:A ((28-390)) | ---SVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGI-GPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARR----HNL--LVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPN-----RRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DR4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -235926 for 3205 contacts (-73.6/contact) +
2D Compatibility (PS) -39198 + (NN) -22337 + (LL) 1272
1D Compatibility (HY) -19600 + (ID) 5400
Total energy: -321189.0 ( -100.21 by residue)
QMean score : 0.455
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