Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEPIILRYFPVLGRAQALRHALADAELAFRDLRIP-LEQWSQHKDSDAGGPYGSLPTLRWHGVEVAETIAIASFLARSLGHYEGRDNGEIARLEAVVSLCYTEVSLQIAQLLWLDLFNPGVDLAAAVPLQFGR-LVARLTRLEAHT--PEAGWFGGERPVMADYFAAEAIEALRYLLGREHDDALRTRLPHLCALARRMAQRPALAQAWSTRPQTFTAHPDEAAMLERLRALPLAATIGASME
1K3Y Chain:A ((1-219))
-AEKPKLHYFNARGRMESTRWLLAAAGVEFEEKFIKSAEDLDKLRND-GYLMFQQVPMVEIDGMKLVQTRAILNYIASKYNLY-GKDIKERALIDMYIEGIA-DLGEMILLLPVCPPE-EKD---AKLALIKEKIKNRYFPAFEKVLKSHGQDYLVGNKLSRADIHLVELLYYVEEL-D----SSLISSFPLLKALKTRISNLPTVKKFLQPGS--PRKPPMDEKSLEEARKIF----------
General information:
TITO was launched using:
RESULT:
Template:
1K3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126774 for 1602 contacts (-79.1/contact) +
2D Compatibility (PS) -24180 + (NN) -19518 + (LL) 1948
1D Compatibility (HY) -8000 + (ID) 2250
Total energy: -178774.0 ( -111.59 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_1K3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K3Y-query.scw
PDB file :
Tito_Scwrl_1K3Y.pdb
: