Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMHFIFSDTAVLLFDFWSVHSPAGMALSVLVLLLLAVLYEGIKVGKAKLLNQVLVNLPTSISQQTIAETDGDSAGSDSFPVGRTHHRWYLCHFGQSLIHVIQVVIGYFIMLAVMSYNTWIFLGVVLGSAVGYYLAYPLLSTA-------------------
2K3Y Chain:A ((1-134))
-------------MVDLEQEFALGGRVLAFHGPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKSFFIHYQGW----------------KSSWDEWVGYDRIRAYNEENIAMKKRLANEAGSTGSAPATGGVKPHRYR
General information:
TITO was launched using:
RESULT:
Template:
2K3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70112 for 758 contacts (-92.5/contact) +
2D Compatibility (PS) -11868 + (NN) 3669 + (LL) 3844
1D Compatibility (HY) 400 + (ID) 800
Total energy: -74867.0 ( -98.77 by residue)
QMean score : 0.023
(partial model without unconserved sides chains):
PDB file :
Tito_2K3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K3Y-query.scw
PDB file :
Tito_Scwrl_2K3Y.pdb
: